PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00539.1.p
Common NameLOC105971452, MIMGU_mgv1a009584mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 338aa    MW: 36711.7 Da    PI: 10.1227
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00539.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31263320359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh 
  Migut.C00539.1.p 263 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLIVTYEGEHNHA 320
                       99************************988****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-15210259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-33249320IPR003657WRKY domain
PROSITE profilePS5081131.089256322IPR003657WRKY domain
SuperFamilySSF1182905.75E-27258320IPR003657WRKY domain
SMARTSM007742.4E-38261321IPR003657WRKY domain
PfamPF031063.5E-27263319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAVEMMPGYN LTSKMEENAA QEAAAAGLHS VDKLIRLLSH SHHHKSRQPS SAAAADYLAV  60
ADVAVDKFKK FISLLDRTRS GHARFRRGPV PNPQPVKIEP VPEPAVLPSS QPPKTEERDP  120
AAGSRIYCPT PIQRLPPLPN HHHQLIKHGS IERKESSTTT INFSSPANSF ISSLTGDTES  180
QPPSMSTSGF QITNLSQISS ASRPPPPSFK RKCSSSMDDA AAAKCGGGSS ASRCHCPKKR  240
KSRLKRVVRV AAISMKMADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE  300
RALDDPAMLI VTYEGEHNHA AQSNTEPPST TMLLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22249319271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851760.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX02e-94WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A022QC050.0A0A022QC05_ERYGU; Uncharacterized protein
STRINGSolyc04g078550.2.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-71WRKY DNA-binding protein 7